Trans-meQTLs across different cancer types

In trans-meQTL analyses, we identified 965,050 trans-meQTLs at FDR < 0.05 and |r|>=0.3 in 23 cancer types for users to search or browse.

     

e.g., "BLCA"
e.g., "rs4975682"
e.g., "cg25599786"
e.g., "PDCD6"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Methylation probe
Methylation position (hg19)
Gene symbol
Beta
t-stat
r
p-valule
Display
BLCA rs3904260 chr11:50327801 A/G cg15704280 chr7:45808275 SEPT13 -1.03 -24.2 -0.78 5.98E-79 Box Plot
BLCA rs3904261 chr11:50327962 G/A cg15704280 chr7:45808275 SEPT13 -1.03 -24.61 -0.78 1.18E-80 Box Plot
BLCA rs3904273 chr11:50344882 A/G cg15704280 chr7:45808275 SEPT13 -1.03 -24.29 -0.78 2.38E-79 Box Plot
BLCA rs3908633 chr11:50336728 C/A cg15704280 chr7:45808275 SEPT13 -1.03 -24.23 -0.78 4.28E-79 Box Plot
BLCA rs3912717 chr11:50341209 C/A cg15704280 chr7:45808275 SEPT13 -1.03 -24.66 -0.78 7.53E-81 Box Plot
BLCA rs3912718 chr11:50341407 C/T cg15704280 chr7:45808275 SEPT13 -1.03 -24.66 -0.78 7.53E-81 Box Plot
BLCA rs3925325 chr6:66804622 G/C cg15611600 chr13:45563400 KIAA1704;NUFIP1 -1.07 -24.46 -0.78 4.98E-80 Box Plot
BLCA rs4065357 chr11:50397316 G/A cg15704280 chr7:45808275 SEPT13 -1.03 -24.46 -0.78 4.99E-80 Box Plot
BLCA rs4065358 chr11:50396891 C/T cg15704280 chr7:45808275 SEPT13 -1.03 -24.46 -0.78 4.99E-80 Box Plot
BLCA rs4079913 chr11:50299865 T/A cg15704280 chr7:45808275 SEPT13 -1.03 -24.12 -0.78 1.22E-78 Box Plot
BLCA rs4080495 chr11:50297641 C/G cg15704280 chr7:45808275 SEPT13 -1.02 -24.23 -0.78 4.21E-79 Box Plot
BLCA rs4097532 chr11:50323878 C/T cg15704280 chr7:45808275 SEPT13 -1.04 -24.27 -0.78 2.99E-79 Box Plot
BLCA rs4097540 chr11:50377558 G/A cg15704280 chr7:45808275 SEPT13 -1.03 -24.95 -0.79 4.85E-82 Box Plot
BLCA rs4242813 chr11:50264644 A/G cg15704280 chr7:45808275 SEPT13 -1.02 -24.64 -0.78 9.01E-81 Box Plot
BLCA rs4247480 chr11:50292766 G/T cg15704280 chr7:45808275 SEPT13 -1.02 -24.62 -0.78 1.08E-80 Box Plot